Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
GNU Affero General Public License v3.0
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Performance improvement - input step #100
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keiranmraine opened 4 years ago
This section should be revised so that the "valid_seqs" are appended to the first
samtools viewcommand and filtered eariler:https://github.com/cancerit/BRASS/blob/5f07ea5b1dec9e99837c5db549b261774cfcf0e3/perl/lib/Sanger/CGP/Brass/Implement.pm#L130-L145
This has been tested previously in an abandoned branch.