search

cancerit / BRASS

Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
GNU Affero General Public License v3.0
57 stars 20 forks source link

ssearch36 dependancy not documented or installed #41

Closed keiranmraine closed 8 years ago

keiranmraine commented 8 years ago

Need to add install and dependancy documentation for ssearch36.

Need this:

curl -L -o tmp.tar.gz --retry 10 https://github.com/wrpearson/fasta36/releases/download/v36.3.8d_13Apr16/fasta-36.3.8d-linux64.tar.gz
mkdir  /tmp/downloads/fasta
tar -C /tmp/downloads/fasta --strip-components 2 -zxf tmp.tar.gz
cp /tmp/downloads/fasta/bin/ssearch36 $OPT/bin/.
rm -rf /tmp/downloads/fasta

Where the user/setup script should set $OPT to the base of there install area.