Good Morning:
I was running brass.pl with all the necessarily files (hopefully). It works fine for the first a few hours but quit later. Checking the log file, it shows:
Running BLAT on reads against NCBI bacterial database...
FAILED: /opt/wtsi-cgp/bin/blat .....
It seems to us the program can't find the path for the "blat", and there is no such path in our system. Could you please let me know how to address this issue? or maybe how to manually change the path so that the program can find the blat sitting in our system.
Thanks for the help
Good Morning: I was running brass.pl with all the necessarily files (hopefully). It works fine for the first a few hours but quit later. Checking the log file, it shows:
Running BLAT on reads against NCBI bacterial database... FAILED: /opt/wtsi-cgp/bin/blat .....
It seems to us the program can't find the path for the "blat", and there is no such path in our system. Could you please let me know how to address this issue? or maybe how to manually change the path so that the program can find the blat sitting in our system. Thanks for the help