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cancerit / BRASS

Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
GNU Affero General Public License v3.0
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Speedup - input step #84

Closed keiranmraine closed 5 years ago

keiranmraine commented 5 years ago

Add outputthreads and sortthreads.

https://github.com/cancerit/BRASS/blob/d08d1746a2db65f86a2febf4f947185c0d61b003/perl/lib/Sanger/CGP/Brass/Implement.pm#L142

Files are generally relatively small so setting to 2 if $options->{'threads'} > 1 is probably more than sufficient.