Should give 0 exit code when detect previous analysis

cancerit / BRASS

Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

GNU Affero General Public License v3.0

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Should give 0 exit code when detect previous analysis #98

Closed keiranmraine closed 4 years ago

keiranmraine commented 4 years ago

All other core algorithms give a zero exit code when they detect a completed analysis. Brass doesn't for some reason and results in the dockstore-cgpwgs container being unable to resume:

https://github.com/cancerit/BRASS/blob/3d8c4ed7b9ef00b1d068cb9d2a42d2d4b87db46f/perl/bin/brass.pl#L301