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cancerit / CaVEMan

SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
http://cancerit.github.io/CaVEMan
GNU Affero General Public License v3.0
60 stars 13 forks source link

Caveman 1.14.0 Compilation error #114

Closed Avramis closed 1 year ago

Avramis commented 1 year ago

Hi I am trying to install Caveman1.14.0 usign the following command make HTSLOC="/Libraries/samtools-1.15/htslib-1.15/" and I get the following error

In file included from src/algos.c:34: src/algos.h:42:10: fatal error: Math.h: No such file or directory 42 | #include "Math.h" | ^~~~ compilation terminated. make: *** [src/algos.o] Error 1

Do you have any advise on how to overcome this issue?

Best wishes Avraam

davidrajones commented 1 year ago

Hi @Avramis ,

You could use our docker images here. Alternatively you will need to install linasm as per the INSTALL.TXT instructions.

Please let me know fi this works for you.

Dave