1.13.15: -x and -y parameters don't work in estep

cancerit / CaVEMan

SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib

http://cancerit.github.io/CaVEMan

GNU Affero General Public License v3.0

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1.13.15: -x and -y parameters don't work in estep #94

Open zhuyezhang opened 5 years ago

zhuyezhang commented 5 years ago

Hi,

I found that -x and -y coverage parameters don't work in estep. Using -x -10, -x 10 and -x 1 can yield the same results. Does anyone know why this happens?

Thanks in advance!

Yezhang

keiranmraine commented 5 years ago

Dave can you comment on this?