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cancerit
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NanoSeq
Analysis software for Nanorate Sequencing (NanoSeq) experiments
GNU Affero General Public License v3.0
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Can efficiency_nanoseq.pl count 'rb' tag correctly?
#102
monagai
opened
1 month ago
4
0 reference calls error
#101
Jucarvag
closed
1 month ago
6
Hotfix/3.5.7
#100
ThomasSClarke
closed
2 months ago
1
Hotfix/3.5.6
#99
ThomasSClarke
closed
3 months ago
0
sort order required for SNP and NOISE masks?
#98
gevro
closed
3 months ago
2
gnomad filtering of indels
#97
gevro
closed
4 months ago
1
Possible bug in filtering of indels
#96
gevro
opened
4 months ago
38
Confirming meaning of 'total' in mut_burden.tsv
#95
gevro
closed
4 months ago
1
Update indelCaller_step2.pl
#94
fa8sanger
opened
5 months ago
0
Update indelCaller_step2.pl - minor fix for mitochondrial genome (cir…
#93
fa8sanger
opened
5 months ago
0
Question about DSC_estimated_error_rates calculation
#92
gevro
opened
5 months ago
1
Question about mutation results
#91
shanyfr
opened
6 months ago
1
var -n parameter
#90
gevro
closed
6 months ago
3
Repeat run of same sample outputs recurrent indels in different order
#89
gevro
opened
7 months ago
0
Minimum base quality
#88
gevro
closed
7 months ago
4
'Truncated dsa output file' error
#87
gevro
closed
7 months ago
1
Bug in 'post' step for indels
#86
gevro
closed
7 months ago
7
runNanoSeq.py var and post by NanoSeq 3.5.4 fails for some of samples that NanoSeq 3.5.1 run successfully.
#85
monagai
opened
7 months ago
2
results.cov.bed.gz last line
#84
gevro
opened
7 months ago
25
quay.io docker
#83
gevro
closed
8 months ago
1
In most samples, INDELs are several times more than SNVs.
#82
monagai
opened
8 months ago
2
Recommended -c setting
#81
gevro
closed
8 months ago
2
QC for indels
#80
gevro
closed
7 months ago
20
Only unique mutations in trint_subs_obs_corrected.tsv
#79
gevro
closed
8 months ago
1
Source of human genome trinucleotide frequencies
#78
gevro
closed
9 months ago
1
retention of variants failing QC
#77
fitzlane86
closed
9 months ago
5
3.5.4 error handling
#76
blex-max
closed
10 months ago
0
plotter fix
#75
blex-max
closed
10 months ago
0
Update nanoseq_results_plotter.R
#74
blex-max
closed
10 months ago
0
--mc option for runNanoSeq.py indel
#73
monagai
opened
10 months ago
2
merge 3.5.2 into main
#72
blex-max
closed
10 months ago
0
Script base path does not exist or is not a directory: /home/ubuntu/bin
#71
monagai
closed
10 months ago
3
merge 3.5.1 into main
#70
blex-max
closed
11 months ago
0
Feature/r version
#69
blex-max
closed
11 months ago
0
update package versions
#68
blex-max
closed
11 months ago
0
Install scripts/dockerfile need to install specific versions of dependencies (R is explicitly causing trouble)
#67
blex-max
closed
10 months ago
6
Test indels
#66
fa8sanger
closed
12 months ago
0
bug fix for part step
#65
fitzlane86
closed
1 year ago
0
indel VCF
#64
gevro
closed
1 year ago
1
Fede's revision of indels and result plotter
#63
rulixxx
closed
1 year ago
0
Add vcf fields
#62
rulixxx
closed
1 year ago
0
Add vcf fields
#61
rulixxx
closed
1 year ago
0
Revert "Feature/new indels"
#60
rulixxx
closed
1 year ago
0
Feature/new indels
#59
rulixxx
closed
1 year ago
0
added new fileds to snv and final vcf files
#58
rulixxx
closed
1 year ago
0
mouse genome masks
#57
gevro
closed
1 year ago
5
not all reads have the RB tags
#56
Ding-hang
opened
1 year ago
7
Recommendation for mouse restriction enzyme
#55
gevro
closed
1 year ago
1
Cycle 6 issue when running full lane with only Nanoseq HpyCH4V libraries
#54
gevro
closed
1 year ago
5
indel from v2.3.2 doesn't have -a -c -v -z arguments
#53
gevro
closed
1 year ago
4
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