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cancerit / PCAP-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)
GNU General Public License v2.0
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Feature/mismatch qc c #15

Closed keiranmraine closed 6 years ago

keiranmraine commented 6 years ago

Adds the ability to apply mismatch QC. I consider the C written by @drjsanger reviewed and functional. mapping through bwa-mem with and without -mmqc and various -mmqcfrac values also tested.

Lots of documentation changes and updates.

ghost commented 6 years ago

Looks good to me.