Improve yaml to make paired read processing more robust

cancerit / PCAP-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)

GNU General Public License v2.0

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Open keiranmraine opened 5 years ago

keiranmraine commented 5 years ago

Originally raised on cgpmap by @byb121:

keiranmraine commented 5 years ago

Also expose -pp -paired-pattern.