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cancerit / PCAP-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)
GNU General Public License v2.0
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bamsort sortthreads #42

Closed mflevine closed 5 years ago

mflevine commented 5 years ago

I noticed that when we increased the mapthreads, the bamsort is now the bottleneck. It looks like the number of helper threads is only passed to outputthreads. Why not also to sortthreads?

keiranmraine commented 5 years ago

Looks to be an oversight, wish I'd checked this this morning.