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cancerit / PCAP-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)
GNU General Public License v2.0
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build with libdeflate #64

Closed mflevine closed 4 years ago

mflevine commented 4 years ago

Build htslib with libdeflate instead of standard zlib. Should significantly optimize hts' compression/decompression. http://www.htslib.org/benchmarks/zlib.html

keiranmraine commented 4 years ago

Thanks for this, will get it sorted in the next few days