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cancerit / PCAP-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)
GNU General Public License v2.0
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MismatchQC - C version #7

Closed keiranmraine closed 6 years ago

keiranmraine commented 6 years ago

C version of read QC based on the code written by Yaobo (internal GitLab)

keiranmraine commented 6 years ago

Confirmed with Inigo that mmQC should be applied after duplicate removal, this may have implications for how things run in CanPipe.