search

cancerit / alleleCount

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
http://cancerit.github.io/alleleCount/
GNU Affero General Public License v3.0
43 stars 8 forks source link

Installation error #34

Closed keyuan closed 6 years ago

keyuan commented 6 years ago

Dear Keiran and David I'm having the following problem when running the setup script. Could you please help me? Many thanks, ke

-n Building alleleCounter ... rm -f ./src/.o ~ ./bin/alleleCounter ./bin/ ./tests/tests_log ./tests/bam_access_tests ./src/.gcda ./src/.gcov ./src/.gcno .gcda .gcov .gcno ./tests/.gcda ./tests/.gcov ./tests/.gcno rm: ./bin/alleleCounter.dSYM: is a directory make: *** [clean] Error 1

keiranmraine commented 6 years ago

Hi @keyuan , please could you provide the following information:

  1. Operating system
  2. Attach the full output of setup.sh by redirecting stdout+stderr to file

Thanks

keiranmraine commented 6 years ago

Please reopen if you are still having difficulties.