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cancerit / alleleCount

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
http://cancerit.github.io/alleleCount/
GNU Affero General Public License v3.0
43 stars 8 forks source link

Add 10X processing mode. #43

Closed keiranmraine closed 6 years ago

keiranmraine commented 6 years ago

@drjsanger can you confirm that you are happy for the x10 stuff to be added in.

ghost commented 6 years ago

@constantAmateur had suggested he may be able to come up with some test cases for this. @constantAmateur can you comment please?

keiranmraine commented 6 years ago

If @constantAmateur can give a time line we can decide if this can go in this release. Likely it's not needed until early next week as I need to complete the WXS docker images still.

constantAmateur commented 6 years ago

@keiranmraine @drjdev I should be able to have add a simple test of the 10X processing mode by the end of this week, early next week at the latest.

constantAmateur commented 6 years ago

@drjsanger @keiranmraine I've added a basic test of the 10X processing mode.