Memory use vs. size of SNP list

cancerit / alleleCount

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

http://cancerit.github.io/alleleCount/

GNU Affero General Public License v3.0

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Memory use vs. size of SNP list #54

Open ilykos opened 5 years ago

ilykos commented 5 years ago

RAM usage spikes when I try a 200+ MB loci list. Do you have any estimates for how much RAM is necessary for a given number of SNVs in the list?