"-b|--hts-file" isn't obvious means BAM/CRAM

cancerit / alleleCount

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

http://cancerit.github.io/alleleCount/

GNU Affero General Public License v3.0

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"-b|--hts-file" isn't obvious means BAM/CRAM #62

Open keiranmraine opened 4 years ago

keiranmraine commented 4 years ago

Feed back from user.

Admittedly, knowing that the file type is something accepted by HTSlib is a bit niche.