Feature/sex in counts - Githubissues

cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing

http://cancerit.github.io/ascatNgs/

GNU Affero General Public License v3.0

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Closed keiranmraine closed 3 years ago

keiranmraine commented 3 years ago

Enable ascatCounts.pl script to capture the "sex" via the loci file for later use.
Allow file as an input for -g option of ascat.pl to remove need to use BAM/CRAM when using count files.
Small fix to output location for final files in ascatCounts.pl.