cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing
http://cancerit.github.io/ascatNgs/
GNU Affero General Public License v3.0
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Reference files for ascatNGS #106

Closed umasaxena closed 3 years ago

umasaxena commented 3 years ago

This link doesnt seem to work any more - ftp://ftp.sanger.ac.uk/pub/cancer/support-files/CPIB/ascatNgs/Human/GRCh37/

Is there an alternative to get the supporting files ?

Thanks

AndyMenzies commented 3 years ago

Which browser are you using? A recent update to chrome may have disabled ftp links. Using Firefox it works fine.

umasaxena commented 3 years ago

Was using Chrom/Safari/Edge - even with enabling ftp links in the browser setting, none of them work

Currently installed and using firefox - (Hope to keep trying)

Screen Shot 2021-04-23 at 8 26 29 AM

umasaxena commented 3 years ago

Btw is there an alternative to getting this file perhaps through git ?

keiranmraine commented 3 years ago

Please use an actual ftp client:

$ ftp -p ftp.sanger.ac.uk
Connected to ftp-sanger-ext.sanger.ac.uk.
220 ProFTPD 1.3.5a Server (WTSI Public FTP Server) [::ffff:193.62.203.115]
Name (ftp.sanger.ac.uk:XXX): anonymous
331 Anonymous login ok, send your complete email address as your password
Password:
230 Anonymous access granted, restrictions apply
Remote system type is UNIX.
Using binary mode to transfer files.
ftp> cd pub/cancer/support-files/CPIB/ascatNgs/Human/GRCh37/
250 CWD command successful
ftp> ls
227 Entering Passive Mode (193,62,203,115,128,136).
150 Opening ASCII mode data connection for file list
drwxrwxr-x   2 ftp      ftp            95 Jun 14  2016 legacy
-rwxrwxr-x   1 ftp      ftp           356 Jun 14  2016 README.txt
-rwxrwxr-x   1 ftp      ftp      67091685 Jun 14  2016 reference.tar.gz
-rwxrwxr-x   1 ftp      ftp            51 Jun 17  2016 reference.tar.gz.md5
226 Transfer complete
umasaxena commented 3 years ago

Worked, many thanks