Generate usable generic output when 'force' option is specified

cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing

http://cancerit.github.io/ascatNgs/

GNU Affero General Public License v3.0

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Generate usable generic output when 'force' option is specified #20

Closed keiranmraine closed 10 years ago

keiranmraine commented 10 years ago

Primarily added to allow dependent process to continue if ASCAT fails to generate a solution. Basically generate copynumber and contamination values equal to the CaVEMan defaults for genomes. Comment/warning in sample.statistics.csv to indicate this is the case.