Human reference files from 1000 genomes VCFs : Illegal division by zero error

cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing

http://cancerit.github.io/ascatNgs/

GNU Affero General Public License v3.0

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Human reference files from 1000 genomes VCFs : Illegal division by zero error #61

Closed sb43 closed 8 years ago

sb43 commented 8 years ago

We get 'Illegal division by zero at ascatSnpPanelGcCorrections.pl line 81, <$SNPIN> line 1.' while running commmands generated using following step in Convert SnpPositions.tsv to SnpGcCorrections.tsv ls -1 splitPos/ | xargs -I {} echo '(ascatSnpPanelGcCorrections.pl genome.fa splitPos/{} > splitGc/{}) >& splitGcLogs/{}.log &'

sb43 commented 8 years ago

Please check the chromosome naming format is identical in genome.fa and SnpPositions.tsv file.