Running ascatNGS without matched normal data

cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing

http://cancerit.github.io/ascatNgs/

GNU Affero General Public License v3.0

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Running ascatNGS without matched normal data #62

Closed makarov-mskcc closed 6 years ago

makarov-mskcc commented 8 years ago

Hello developers, I'd like to apply ascatNGS to the cell line sample. I wonder if it is possible to run ascatNGS without matching normal bam file, in the same was as its microarray counterpart https://www.crick.ac.uk/peter-van-loo/software/ASCAT

Thank you Vlad

keiranmraine commented 6 years ago

We don't support this use case under NGS datasets.