Feature/tsv to big wig - Githubissues

cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing

http://cancerit.github.io/ascatNgs/

GNU Affero General Public License v3.0

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Closed keiranmraine closed 7 years ago

keiranmraine commented 8 years ago

@AndyMenzies , adds the generation of BigWig files for use in JBrowse. Plots and colours are JBrowse, just the raw data files are in this PR.

Can be optionally disabled with -nb or -nobigwig.

Total (green), Minor (red) and raw copynumber (grey dots): screen shot 2016-11-09 at 12 38 21

LogR (grey dots) + Segmented LogR (green): screen shot 2016-11-09 at 12 38 31

BAF (grey dots) + Segmented BAF (green): screen shot 2016-11-09 at 12 38 35

AndyMenzies commented 8 years ago

Errr, I might be wrong....

In ascat.pl you are using $opts{'nobigwig'} but in Sanger::CGP::Ascat::Implement you are using $options->{'nb'}

Is that going to cause issues?