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cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing
http://cancerit.github.io/ascatNgs/
GNU Affero General Public License v3.0
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Handle chr/non-chr magically #65

Open keiranmraine opened 7 years ago

keiranmraine commented 7 years ago

It should be possible to check the BAM @SQ lines against the loci files and automatically handle the mismatch.