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cancerit / ascatNgs

Somatic copy number analysis using WGS paired end wholegenome sequencing
http://cancerit.github.io/ascatNgs/
GNU Affero General Public License v3.0
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How to output all the solution that ASCATngs found? #70

Closed jiaqianwang closed 7 years ago

jiaqianwang commented 7 years ago

How to output all the solution that ASCATngs found? Now the software only output the best solutions with purity, polidy and copy numbers. However sometimes the solution is not perfect. So how can I output the other solutions?

keiranmraine commented 7 years ago

Hi,

ascatNgs has always only produced one result (unlike the underlying R library), you can however prevent cleanup of the workspace with -noclean and then re-fit with adjusted purity/ploidy parameters.

You will need to delete some files:

rm $OUTPUT/tmpAscat/progress/*ascat*
rm $OUTPUT/tmpAscat/progress/*finalise*