ability to create output directory

cancerit / cgpCaVEManPostProcessing

Flagging add on to CaVEMan

http://cancerit.github.io/cgpCaVEManPostProcessing/

GNU Affero General Public License v3.0

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ability to create output directory #19

Closed sb43 closed 7 years ago

sb43 commented 7 years ago

Error trying to open output file ../flagging_out/split.vcf.1: No such file or directory This error arises when flagging_out directory doesn't exists. flagging script should create output folder when it couldn't find one.

ghost commented 7 years ago

Should it create directories? How deep should we go with directory creation? Surely an error message where the directory does not exist suffices? Opinions @keiranmraine @sb43 ?