cancerit / cgpCaVEManPostProcessing

Flagging add on to CaVEMan
http://cancerit.github.io/cgpCaVEManPostProcessing/
GNU Affero General Public License v3.0
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downgrades bedtools in error #29

Open keiranmraine opened 6 years ago

keiranmraine commented 6 years ago

Looks like a minor bug in setup.sh

Building bedtools ...PREREQUISITE: bedtools version >= 2.21.0 but found version 2.27.1). Installing ...
+ cd /nfs/users/nfs_k/kr2/GitHub/cgpCaVEManPostProcessing/install_tmp
+ '[' '!' -e bedtools ']'
+ get_distro bedtools2 https://github.com/arq5x/bedtools2/releases/download/v2.21.0/bedtools-2.21.0.tar.gz