Possible bug: cgpFlagCaVEMan.pl

cancerit / cgpCaVEManPostProcessing

Flagging add on to CaVEMan

http://cancerit.github.io/cgpCaVEManPostProcessing/

GNU Affero General Public License v3.0

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Possible bug: cgpFlagCaVEMan.pl #6

Closed jwhsanger closed 9 years ago

jwhsanger commented 9 years ago

Hi Guys,

line 180

Initialisation of Vcf object

my $vcf = Vcf->new(file=>$opts->{'f'}, -version=>'4.1');

has a dash in front of version key - is that intentional?

keiranmraine commented 9 years ago

Doesn't look like this causes an issue as the input VCF from CaVEMan is correctly defined as 4.1. Checked against existing files generated with this code. I have fixed it though.