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cancerit / cgpCaVEManWrapper

Reference implementation of CGP workflow for CaVEMan SNV analysis
http://cancerit.github.io/cgpCaVEManWrapper/
GNU Affero General Public License v3.0
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Default CN options and behaviour of species/assembly lookup adltered #15

Closed ghost closed 9 years ago

ghost commented 9 years ago

Now by default uses species and assembly from BAM, where commandline options are passed will default to BAM and warn if they don't match.