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cancerit / cgpCaVEManWrapper

Reference implementation of CGP workflow for CaVEMan SNV analysis
http://cancerit.github.io/cgpCaVEManWrapper/
GNU Affero General Public License v3.0
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use a contained tempfolder for working files #2

Closed keiranmraine closed 9 years ago

keiranmraine commented 10 years ago

https://github.com/cancerit/cgpCaVEManWrapper/blob/dev/bin/caveman.pl#L109-L115

Have a look in the pindel version:

https://github.com/cancerit/cgpPindel/blob/dev/perl/bin/pindel.pl#L167-L172

and the cleanup becomes:

https://github.com/cancerit/cgpPindel/blob/dev/perl/bin/pindel.pl#L81-L87