Tabs should be replaced with 2 spaces, the hidden nature has messed up the alignment of the help/man docs:
caveman.pl [options]
Required parameters:
-outdir -o Folder to output result to.
-reference -r Path to reference genome index file *.fai
-tumour-bam -tb Path to tumour bam file
-normal-bam -nb Path to normal bam file
-ignore-file -ig Path to ignored regions file
-tumour-cn -tc Path to tumour copy number file
-normal-cn -nc Path to normal copy number file
-species -s Species name for (output in VCF)
-species-assembly -sa Species assembly for (output in VCF)
ghost
commented
10 years ago
Tabs should be replaced with 2 spaces, the hidden nature has messed up the alignment of the help/man docs: