Closed winni2k closed 4 years ago
I'm still experimenting, but It looks like something like this would work with singularity:
CGPWRAPPER_VERSION=1.16.0
singularity pull cgpcavemanwrapper-$CGPWRAPPER_VERSION.sif docker://quay.io/wtsicgp/cgpcavemanwrapper:$CGPWRAPPER_VERSION
singularity exec cgpcavemanwrapper-$CGPWRAPPER_VERSION.sif caveman.pl --help
Please see the wiki and command line help:
https://github.com/cancerit/cgpCaVEManWrapper/wiki
Docker and singularity are known to work.
How do I run this tool?