cancerit / cgpPindel

Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
http://cancerit.github.io/cgpPindel/
GNU Affero General Public License v3.0
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ifstream created with NULL value #49

Closed ezzymn closed 7 years ago

ezzymn commented 7 years ago

Last iteration of the for loops creates an ifsteam with a NULL value

Line 305 :

    for (int FileIndex = 4; FileIndex <= argc; FileIndex++) {
        cout << "processing file: " << argv[FileIndex] << endl;
        ifstream  inf_ReadsSeq(argv[FileIndex]);   // input file name
        ReadInRead(inf_ReadsSeq, CurrentChr, WhichChr, Output);