It's not obvious, without prior knowledge of docker, how to actually run the containerised commands once pulled via "docker pull quay.io/wtsicgp/telomerecat:${VERSION_TEL}".
May I suggest adding an example command so an inexperienced user can see how to get their data to the container and of course how to actually run a telomerecat command: "docker run -v $(pwd):/home/ubuntu quay.io/wtsicgp/telomerecat:4.0.1 telomerecat bam2length bam_input"
It's not obvious, without prior knowledge of docker, how to actually run the containerised commands once pulled via "docker pull quay.io/wtsicgp/telomerecat:${VERSION_TEL}".
May I suggest adding an example command so an inexperienced user can see how to get their data to the container and of course how to actually run a telomerecat command: "docker run -v $(pwd):/home/ubuntu quay.io/wtsicgp/telomerecat:4.0.1 telomerecat bam2length bam_input"