Open spnlab opened 1 year ago
There is a random number seed used as part of the algorithm, this can impact the outcome if there are many very good answers with very close likelyhoods.
There is a hidden command line option (--seed_randomness) where you can set the seed value, we use 42 for unit testing.
Thanks for the updates. Will try (--seed_randomness).
There is a random number seed used as part of the algorithm, this can impact the outcome if there are many very good answers with very close likelyhoods.
There is a hidden command line option (--seed_randomness) where you can set the seed value, we use 42 for unit testing.
Hi @AndyMenzies,
I tried using the --seed_randomness 42
flag as an argument in the command but get the following error:
error: unrecognized arguments: 42
Can you please help troubleshoot?
Thanks a lot!
Hi there, This tools has given me different results with same script and same input but running twice. The script I was running: telomerecat bam2length -N 100 -v 2 -p 32 -e input.bam -r ref.fa --outbam_dir output_dir --output ouptu_telomerecat_length.csv Once I got Length = 2400.46 Other time I got Length = 2418.03
Any idea why?