Goal: verify that python, python libs, external tools such as annovar are all installed and/or available on the system, and that they are appropriate versions.
For example:
] gidget check-config
Sorry, you must be a site administrator for gidget to run this option.
] gidget --admin check config
Verifying current user is an admin for this gidget site installation.. ok
Reading configuration from /etc/gidget.conf:
testing python: 2.7 OK
testing python dependencies: ...
testing external tools: annovar, ...
Goal: verify that python, python libs, external tools such as annovar are all installed and/or available on the system, and that they are appropriate versions.
For example:
] gidget check-config
Sorry, you must be a site administrator for gidget to run this option.
] gidget --admin check config
Verifying current user is an admin for this gidget site installation.. ok Reading configuration from /etc/gidget.conf: testing python: 2.7 OK testing python dependencies: ... testing external tools: annovar, ...
gidget installation appears to be okay!