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candYgene / queries

SPARQL queries for Web API
Apache License 2.0
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Can't use GROUP_CONCAT in the query #9

Closed arnikz closed 5 years ago

arnikz commented 5 years ago

See query: getGeneAnnotations.rq

?go_id -> GROUP_CONCAT(?go_id, ', ') AS ?uniprot_goa ... GROUP BY ...

c-martinez commented 5 years ago

I think you want:

(GROUP_CONCAT(?go_id; separator=", ") as ?uniprot_goa) ... GROUP BY ?gene_id ?gene_name ?transcript_id ?sgn_des ?uniprot_acc ?uniprot_reviewed ?uniprot_existence ?uniprot_des

Just committed a change which should make it work.

arnikz commented 5 years ago

@c-martinez the query works when executed against the SPARQL endpoint but doesn't show up in the API.

c-martinez commented 5 years ago

Ah! It seems it is a bug on grlc itself, not on the query... you are using the clariah/grlc:dev docker image?

c-martinez commented 5 years ago

Updated rdflib dependencies seems to fix the issue -- can you try again and reopen issue if necessary?