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cangermueller / deepcpg

Deep neural networks for predicting CpG methylation
MIT License
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Fine tuning joint model doesn't seem to work. #12

Closed Bonder-MJ closed 6 years ago

Bonder-MJ commented 7 years ago

Is it possible to use --fine_tune on a joint model?

I tried to follow the Ipython example for retraining and replaced toe --cpg_model with --joint_model but when it tries to load the previous model I get an null pointer exception. Also when trying to give it the model separately by using --model_files this is not solved. In this case it has issues with not matching samples between the model and the new training data.

cangermueller commented 6 years ago

Sorry for the the late reply: I am quite busy with my new job ;-). Did you solve the issue? --fine_tune should also work for joint models.

Bonder-MJ commented 6 years ago

I used another approach. I didn't manage to fine tine the joint model. I get it ;-) Thanks for the reply!

On Mon, Oct 16, 2017 at 3:26 AM, Christof Angermueller < notifications@github.com> wrote:

Sorry for the the late reply: I am quite busy with my new job ;-). Did you solve the issue? --fine_tune should also work for joint models.

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