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cangermueller / deepcpg

Deep neural networks for predicting CpG methylation
MIT License
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CpG profiles file not found #24

Open pegahmavaee opened 5 years ago

pegahmavaee commented 5 years ago

Hi,

I tried to run ./examples/setup.sh and I got an error when it tries to download CpG profiles from the following address "http://www.ebi.ac.uk/~angermue/deepcpg/alias/b3afd7f831dec739d20843a3ef2dbeff" How can I find CpG profile files to run the example?

Thanks in advance for your suggestion. -Pegah

Chamemee commented 5 years ago

@pegahmavaee now can you find CpG profiles file? I'm also looking for CpG profiles too.

cangermueller commented 5 years ago

The download is currently broken. You can download all data for running the examples here.

Chamemee commented 5 years ago

@cangermueller thank you very much.

Chamemee commented 5 years ago

@cangermueller
Hello, I tried to run Fine-tuning in dcpg_download.py and the address can't download. How can I find Model Zoo files to run the example? DATA_HOST = 'http://www.ebi.ac.uk/~angermue/deepcpg/alias' MODEL_ZOO = 'https://github.com/cangermueller/deepcpg/blob/master/' \ 'docs/models.md' http://www.ebi.ac.uk/~angermue/deepcpg/alias/f89b2e8344012d73e95504da06bcf378 Thank you. Chamemee