cangermueller / deepcpg

Deep neural networks for predicting CpG methylation
MIT License
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keras/tensorflow version incompatibility #38

Open sameelab opened 3 years ago

sameelab commented 3 years ago

Hi,

I have used python==3.6.3, keras==2.2.0, tensorflow==1.10.0, numpy==1.14, pandas==0.23.4, and pip installed deepcpg (v1.0.7) as previously described in a different issue (#37); I've also tried using an earlier version combination of tensorflow==1.6 and keras==2.1.6, but the following error occurs: 202105101300

The issue states that "'list' object has no attribute 'get_shape'". My labmate and I believe this comes from a version control situation with tensorflow, but we don't understand how this error came into place.

Using any further older version would result in the 'keras.engine' has no attribute 'input_layer' error as described in the previous issue (#37).

I have exported my current environment as a yml file and would be happy to share that as well.