canmod / macpan2

Rebuilding https://github.com/mac-theobio/McMasterPandemic/
https://canmod.github.io/macpan2/
GNU General Public License v3.0
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add a basic Lotka-Volterra model to the model library #135

Closed papsti closed 10 months ago

papsti commented 12 months ago

equations here

using the new model spec on the refactorcpp branch

davidearn commented 11 months ago

I like the idea of having L-V in the model library, but I have a few suggestions:

Making these options available as part of the model library would not take much extra effort and would potentially draw in a much larger ecological audience.

stevencarlislewalker commented 11 months ago

I agree completely @davidearn . Thank you for these suggestions.

Similarly, listening to Jane's talk last week made me want to include within-host immune response models.

papsti commented 11 months ago

i drafted a model definition for the basic lotka-voltera, but i'm running into errors. i'll push a branch off of refactorcpp with it so that we can troubleshoot.

stevencarlislewalker commented 11 months ago

@jfree-man has completed this task with 8a5d7c10be46208e635aa8abb75be0596f11f84f

stevencarlislewalker commented 11 months ago

Reopening, assigning to @jfree-man, and expanding scope as suggested by @davidearn.

I like the idea of having L-V in the model library, but I have a few suggestions:

* include both L-V predator-prey and L-V competition models

* include the option for a carrying capacity in prey growth (so logistic rather than exponential growth of prey)

* include options for all three standard (Holling) functional responses

Making these options available as part of the model library would not take much extra effort and would potentially draw in a much larger ecological audience.