Papers

[stevencarlislewalker]

• [ ] macpan-retro (previously Expandify) (Papst, et al)
  • next step: @papsti will get a draft that is placed on a preprint server (due : July 12)
  • @papsti to assess what it would take to publish without having macpan-base published first (done)
• [ ] Product models (Flynn-Primrose, et al)
  • next step: determine who will look at it next (@stevencarlislewalker , @davidearn , @dushoff are currently all too busy)
  • @bbolker to determine minimal submit-able scope (done -- @bbolker improved the ms and decided that more people should look at it)
  • venue: Bull Math Bio (changed from J Math Biol)
  • ms: overleaf
• [ ] Endemic covid model
  • possible next step for @stevencarlislewalker : fit to age structured data
  • @stevencarlislewalker to fit @wzmli model to data (done -- fit to H and sero)
  • other next step: @wzmli to write draft of the macpan2 part (due : April 18, June 15)
• [ ] macpan-intro (previously (macpan2-base)
  • next step: @stevencarlislewalker draft outline (due : Apr 18, June 30)
  • venues -- try in this order: PLoS Computational Biology, BMC Bioinformatics, R Journal, JSS
  • ms: https://github.com/canmod/macpan2-ms
  • backlog:
    • Add PLoS Computational Biology template to macpan2-ms
  • related:
    • https://github.com/canmod/macpan2/issues/194
• [ ] Vaccination impact paper (Papst and Mitchell) macpan 1.5
  • next step: @evanjmitchell to provide a draft (due : May)
• [ ] Kevin Zhao's scarlet fever paper (Zhao and Earn)
  • next step: @stevencarlislewalker to (due : ??)
• [ ] Estimating smooth time-variation of epidemiological parameters (Forkutza, Bolker, Walker)
  • Forkutza will finish his thesis mid-April, then we'll look at adapting/submitting it
• [ ] Wastewater paper (Earn, Earn, et al.) macpan 1.5?
  • next step: @stevencarlislewalker to update model to macpan2 once macpan2-ms paper is done (due : ??)
  • alternative next step: @mayaearn to write details about target journals and status here in this ticket (due : ??)
• [ ] Cross immunity (Mike Li, JD, etc )
  • next step: @wzmli to have a draft (due : Apr 19)
  • backlog:
    • @stevencarlislewalker to maybe redo the model for @wzmli
• [ ] NFLD COVID metapopulation model
• [ ] Structured models
• [x] MPox: Milwid et al. 2023

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Milwid, Rachael M., Michael Li, Aamir Fazil, Mathieu Maheu-Giroux, Carla M. Doyle, Yiqing Xia, Joseph Cox, et al. 2023. “Exploring the Dynamics of the 2022 Mpox Outbreak in Canada.” Journal of Medical Virology 95 (12): e29256. https://doi.org/10.1002/jmv.29256.