cannin / gsoc_2023_pytorch_pathway_commons

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Create baseline model to compare with GNN models #11

Closed inoue0426 closed 11 months ago

inoue0426 commented 1 year ago

Need to make a baseline model. We can use automl models such as FLAML, AutoSklearn, and AutoKeras.

Favourj-bit commented 1 year ago

Hi @inoue0426 I don't know if you could please help expand on this task. I don't really understand what I'm supposed to do

inoue0426 commented 1 year ago

@Favourj-bit make a baseline results using other model to compare with your GNN models

inoue0426 commented 1 year ago

@Favourj-bit Reference: https://github.com/microsoft/FLAML https://automl.github.io/auto-sklearn/master/ https://autokeras.com/

Sample: https://github.com/cannin/graph_neural_network_drug_response/blob/main/notebook/get_autokeras.ipynb

cannin commented 1 year ago

@Favourj-bit I agree with @inoue0426 that this is a good next step; reviewers of the work often ask for such comparisons.