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cannin / gsoc_2023_pytorch_pathway_commons

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Colab notebooks to parse dataset #3

Closed Favourj-bit closed 1 year ago

Favourj-bit commented 1 year ago

Using pandas to parse PathwayCommons12.reactome.hgnc.sif.gz dataset on google colab

inoue0426 commented 1 year ago

@Favourj-bit Could you attach the colab link to the comment?

Favourj-bit commented 1 year ago

@inoue0426 https://colab.research.google.com/drive/1jY7Y_M6hU84jPtDDO-gRuamTzTxuEK6A?usp=sharing

Favourj-bit commented 1 year ago

Created colab notebook to show the parsing of data from cBioPortal (ACC, data_clinical_patient.txt and data_mrna_seq_v2_rsem.txt) https://colab.research.google.com/drive/16irWREQOMOOSuv-aBWLwUERZ8_gqWu8V?usp=sharing

inoue0426 commented 1 year ago

@Favourj-bit Do you want me to review this? You can choose to merge this with or without review.