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cansyl / CROssBAR

Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
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How to access the CROssBAR database? #1

Open hongqing1986 opened 1 year ago

hongqing1986 commented 1 year ago

The API ”www.ebi.ac.uk/Tools/crossbar/swagger-ui.html” is unavailability， is there any other way that I can access the database? And is it possible that the code constructed the database be open source? Looking forward to your reply!

tuncadogan commented 1 year ago

Thank you for the query. We did not know about the issue, we are looking into this. I'll let you know as soon as we have an answer for both of the questions.

hongqing1986 commented 1 year ago

Thanks for your reply! I am very expect for your answer as soon as possible.

hongqing1986 commented 1 year ago

If you have an answer for one of the mentioned above questions, you can also tell me, thanks.

tuncadogan commented 1 year ago

Swagger interface of CROssBAR will be unavailable due to an XSS vulnerability, until we find a valid solution. However, CROssBAR API still works without a problem. You can directly submit API queries, such as:

https://www.ebi.ac.uk/tools/crossbar/proteins?accession=A0A023GRW5

which will give you information about the protein with the UniProt accession "A0A023GRW5" including its interactions, functions, cross-references, variations, and more.

Please check https://www.ebi.ac.uk/Tools/crossbar/v2/api-docs for information on how to use the CROssBAR API.

hongqing1986 commented 1 year ago

Thank you very much, I will have a try.