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cansyl / ECPred

GNU General Public License v3.0
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predictBatchPEPSTATS - no such file #7

Closed rpkarandev closed 1 year ago

rpkarandev commented 1 year ago

Greetings,

It would be great if you can help me figure out this error. I am trying to run ECPred on a bunch of sequences. However, I could not get it to run even for the sample fast file.

Main classes of input proteins are being predicted ... Exception in thread "main" java.io.FileNotFoundException: ./temp/testResult/1673274969648/1.-.-.-/pepstats/temp.out (No such file or directory) at java.base/java.io.FileInputStream.open0(Native Method) at java.base/java.io.FileInputStream.open(FileInputStream.java:219) at java.base/java.io.FileInputStream.(FileInputStream.java:157) at java.base/java.io.FileInputStream.(FileInputStream.java:112) at java.base/java.io.FileReader.(FileReader.java:60) at fasta2Pepstats_noscale.parse_pepstats(fasta2Pepstats_noscale.java:66) at predictBatchPEPSTATS.main(predictBatchPEPSTATS.java:68) at runEC.predictions(runEC.java:49) at ECPred.main(ECPred.java:108)

alperendalkiran commented 1 year ago

Hello, Probably, the EMBOSS Pepstats tool is not working. Could you please share your run command with me?

rpkarandev commented 1 year ago

Thank you for the quick response. This is the command I used. I tried varying the temp folder (with/without '/' ).

java -jar ECPred.jar weighted ./sample.fasta ./ ./temp/ result_sample.tsv

rpkarandev commented 1 year ago

Reinstalling libgd lib and ECpred solved the issue.