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cansysbio / ConsensusTME

ConsensusTME Gene Sets and R Script
GNU General Public License v3.0
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Error: No genes in the gene sets could be matched to the identifiers in the expression data #6

Open BirongZhang opened 4 months ago

BirongZhang commented 4 months ago

Dear author,

My script worked quite well last year, but I got this error this year even I reinstalled the package:

> length(intersect(row.names(bulkExpMatrix), row.names(CIBERSORTGeneSet)))
[1] 510
> CIBERSORT <- ConsensusTME::geneSetEnrichment(bulkExpMatrix, CIBERSORTGeneSet) %>% data.frame()
Error in ConsensusTME::geneSetEnrichment(bulkExpMatrix, CIBERSORTGeneSet) : 
  Error: No genes in the gene sets could be matched to the identifiers in the expression data

Could you please have a look at this when you have time? Many thanks.

Kind regards, Birong