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caporaso-lab-graveyard / miMAP

BSD 3-Clause "New" or "Revised" License
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create a pyqi-based version of the sra_to_qiime script #1

Open gregcaporaso opened 11 years ago

gregcaporaso commented 11 years ago

The sra_to_qiime.py script in this gist should be converted to be a pyqi Command. (Don't worry about creating an Interface for it right now.)

Start by installing pyqi and then working through the pyqi getting started tutorials. Then create a new SraToQiime pyqi Command, and add it to this repository.

casaburi commented 11 years ago

Here is the new version of the sra_to_qiime.py converted for pyqi.

https://gist.github.com/casaburi/5709681#file-sra_to_qiime-py

gregcaporaso commented 11 years ago

Can you add this to your fork of the meta-miRNA repository and then submit a pull request?

On Fri, Oct 11, 2013 at 2:25 PM, Giorgio Casaburi notifications@github.comwrote:

Here is the new version of the sra_to_qiime.py converted for pyqi.

https://gist.github.com/casaburi/5709681#file-sra_to_qiime-py

— Reply to this email directly or view it on GitHubhttps://github.com/gregcaporaso/meta-miRNA/issues/1#issuecomment-26175550 .

casaburi commented 11 years ago

I thought I already did that, it should probably show up a pull request now.

Def. Quota Greg Caporaso notifications@github.com:

Can you add this to your fork of the meta-miRNA repository and then submit a pull request?

On Fri, Oct 11, 2013 at 2:25 PM, Giorgio Casaburi notifications@github.comwrote:

Here is the new version of the sra_to_qiime.py converted for pyqi.

https://gist.github.com/casaburi/5709681#file-sra_to_qiime-py

? Reply to this email directly or view it on
GitHubhttps://github.com/gregcaporaso/meta-miRNA/issues/1#issuecomment-26175550 .

Reply to this email directly or view it on GitHub: https://github.com/gregcaporaso/meta-miRNA/issues/1#issuecomment-26262630

Giorgio Casaburi, M.S., Ph.D.c CEINGE-Biotecnologie Avanzate Via Gaetano Salvatore,486 - 80145 Napoli, Italy Tel.: +39 081 37 37 855 Mobile: +39 347 4831431 e-mail: casaburi@ceinge.unina.it

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