This is the sra_to_qiime.py script I tried to convert in pyqi.

caporaso-lab-graveyard / miMAP

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This is the sra_to_qiime.py script I tried to convert in pyqi. #4

Closed casaburi closed 11 years ago

gregcaporaso commented 11 years ago

@casaburi, this needs some work to use the pyqi framework (you can't have it use script_info). This will require you to mostly re-write the run method.

You should make those changes, and then commit another version to your current branch and push to your upstream repository. That will update this pull request, so you won't need to issue another one.

gregcaporaso commented 11 years ago

@casaburi, added a couple more comments. I'm not sure if this was ready for re-review or not, but just let me know when you think it is (after addressing these new comments) and I'll do another review then.