demo

[gregcaporaso]

• [x] dashboard/index page
• [x] function that returns list of executable and non-executable workflows given the state of the study

 get_study_state(study_id) -> {
    'study-id': study-id,
    'workflow': {
        'exe' : [workflow-id],
        'nexe': [workflow-id]
    },
    'data': {data-filepath: data-md5}
 }

• [x] get file path from file type and study id

def get_data_filepath(data_type, study_id) -> data_filepath
# ValueError on unknown data type
# FileNotFoundError on non-existant file

• [x] create workflow (no-op if workflow exists)

def create_workflow(workflow_id, study_id) -> workflow filepath

• [x] function remove workflow

def delete_workflow(workflow_id, study_id) -> None
FileNotFoundError if workflow doesn't exist
# rms workflow md file

• [x] function that describes current state

def get_system_info() -> {'version' : version of software} 

• [x] function describing workflow category

def get_workflow_category_info(category_id) -> {
        'category-id': category-id,
        'title': category-title
}

• [x] function describing workflow

def get_workflow_info(workflow_id) -> {
       'workflow-id': workflow-id,
       'category-id': category-id,
       'title': workflow-title,
       'inputs': [data-type],
       'outputs': [data-type]
}

• [x] add phylogenetic diversity calculations to workflows